Mercurial > repos > bimib > cobraxy

comparison COBRAxy/custom_data_generator_beta.py @ 445:c3bb75ce07e6 draft

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author francesco_lapi
date Thu, 11 Sep 2025 09:08:15 +0000
parents 06564187fba3
children a6e45049c1b9
comparison
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444:06564187fba3 445:c3bb75ce07e6
191 logger = logging.getLogger(__name__) 191 logger = logging.getLogger(__name__)
192 192
193 model = modelUtils.translate_model_genes( 193 model = modelUtils.translate_model_genes(
194 model=model, 194 model=model,
195 mapping_df= pd.read_csv(ARGS.tool_dir + "/local/mappings/genes_human.csv", dtype={'entrez_id': str}), 195 mapping_df= pd.read_csv(ARGS.tool_dir + "/local/mappings/genes_human.csv", dtype={'entrez_id': str}),
196 target_nomenclature=ARGS.gene_format.replace("HGNC_", "HGNC "), 196 target_nomenclature=ARGS.gene_format,
197 source_nomenclature='HGNC_symbol', 197 source_nomenclature='HGNC_symbol',
198 logger=logger 198 logger=logger
199 ) 199 )
200 200
201 # generate data 201 # generate data