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comparison COBRAxy/ras_to_bounds.xml @ 68:d5dd7e863488 draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 09:03:19 +0000
parents c46df775b9fa
children c32d17ffc5f8
comparison
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67:1f928ad6a87e 68:d5dd7e863488
31 --input_ras $cond_ras.input_ras 31 --input_ras $cond_ras.input_ras
32 #set $names = "" 32 #set $names = ""
33 #for $input_temp in $cond_ras.input_ras: 33 #for $input_temp in $cond_ras.input_ras:
34 #set $names = $names + $input_temp.element_identifier + "," 34 #set $names = $names + $input_temp.element_identifier + ","
35 #end for 35 #end for
36 --name $names 36 --names $names
37 #end if 37 #end if
38 --out_log $log 38 --out_log $log
39 ]]> 39 ]]>
40 </command> 40 </command>
41 <inputs> 41 <inputs>
102 +------------+----------------+----------------+ 102 +------------+----------------+----------------+
103 103
104 Example for multiple RAS matrices: 104 Example for multiple RAS matrices:
105 - cancer.csv and normal.csv generated by RAS generator tool (the two class names are 'cancer' and 'normal'). 105 - cancer.csv and normal.csv generated by RAS generator tool (the two class names are 'cancer' and 'normal').
106 - This tool returns one unique collection of bounds files for both cancer and normal cells (normalization is performed across all cells). 106 - This tool returns one unique collection of bounds files for both cancer and normal cells (normalization is performed across all cells).
107 - The association cell-class is reported in the 'cell_class' file that is udesul to perform flux enrichment analysis based on class partenrship. 107 - The association cell-class is reported in the 'cell_class' file that is useful to perform flux enrichment analysis based on class partenrship.
108 108
109 Output: 109 Output:
110 ------------- 110 -------------
111 111
112 The tool generates: 112 The tool generates: