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--- a/COBRAxy/src/flux_simulation.py Thu Dec 11 11:17:33 2025 +0000
+++ b/COBRAxy/src/flux_simulation.py Thu Dec 11 13:30:36 2025 +0000
@@ -120,7 +120,7 @@
parser.add_argument('-idop', '--output_path',
type=str,
- default='flux_simulation/',
+ default='flux_simulation',
help = 'output path for fluxes')
parser.add_argument('-otm', '--out_mean',
@@ -537,8 +537,8 @@
global ARGS
ARGS = process_args(args)
- if not os.path.exists('flux_simulation'):
- os.makedirs('flux_simulation')
+ if not os.path.exists(ARGS.output_path):
+ os.makedirs(ARGS.output_path)
# --- Read input files and names from the provided file paths ---
with open(ARGS.input_file, 'r') as f:
--- a/COBRAxy/src/importMetabolicModel.xml Thu Dec 11 11:17:33 2025 +0000
+++ b/COBRAxy/src/importMetabolicModel.xml Thu Dec 11 13:30:36 2025 +0000
@@ -96,7 +96,7 @@
</inputs>
<outputs>
- <data name="log" format="txt" label="MetabolicModelSetting - Log" />
+ <data name="log" format="txt" label="Import Metabolic Model - Log" />
<data name="out_tabular_engro2" format="tabular" label="ENGRO2_model_tabular">
<filter>cond_model['model_selector'] == 'ENGRO2'</filter>
@@ -155,3 +155,4 @@
+
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