Mercurial > repos > bimib > cobraxy

changeset 108:22cebbdb4b6d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author luca_milaz
date Sun, 13 Oct 2024 14:35:39 +0000
parents 58919e82d96e
children ba10ad78fc5f
files COBRAxy/ras_to_bounds.py
diffstat 1 files changed, 0 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/ras_to_bounds.py	Sun Oct 13 14:06:53 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sun Oct 13 14:35:39 2024 +0000
@@ -175,14 +175,6 @@
     rxns_ids = [rxn.id for rxn in model.reactions]
     
     # Set medium conditions
-    ''' 
-    reactions_medium=model2.medium.keys()
-        for reaction in reactions_medium:
-            if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"):
-                model2.reactions.get_by_id(reaction).lower_bound=-float(ras_meta.loc[cell,"countmatrix_"+reaction])
-            if(reaction == "EX_lac__L_e"):
-                model2.reactions.get_by_id(reaction).lower_bound=float(0.0)
-    '''
     for reaction, value in medium.items():
         if value is not None:
             if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"):