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changeset 530:352c51a39e23 draft

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Uploaded
author francesco_lapi
date Wed, 22 Oct 2025 12:18:07 +0000
parents 6acd64232dad
children 1fc5c1edb0ef
files COBRAxy/ras_generator.py
diffstat 1 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/ras_generator.py	Wed Oct 22 12:05:30 2025 +0000
+++ b/COBRAxy/ras_generator.py	Wed Oct 22 12:18:07 2025 +0000
@@ -350,16 +350,16 @@
         
         # create the dataframe of ras (rules x samples)
         ras_df = pd.DataFrame(data=ras_df, index=range(len(self.dict_rule_reactions)), columns=self.cell_ids)
-        ras_df['REACTIONS'] = [reaction_ids for rule, reaction_ids in self.dict_rule_reactions.items()]
+        ras_df['Reactions'] = [reaction_ids for rule, reaction_ids in self.dict_rule_reactions.items()]
         
         reactions_common = pd.DataFrame()
-        reactions_common["REACTIONS"] = ras_df['REACTIONS']
-        reactions_common["proof2"] = ras_df['REACTIONS']
-        reactions_common = reactions_common.explode('REACTIONS')
-        reactions_common = reactions_common.set_index("REACTIONS")
+        reactions_common["Reactions"] = ras_df['Reactions']
+        reactions_common["proof2"] = ras_df['Reactions']
+        reactions_common = reactions_common.explode('Reactions')
+        reactions_common = reactions_common.set_index("Reactions")
 
-        ras_df = ras_df.explode("REACTIONS")
-        ras_df = ras_df.set_index("REACTIONS")
+        ras_df = ras_df.explode("Reactions")
+        ras_df = ras_df.set_index("Reactions")
 
         if drop_na_rows:
             ras_df = ras_df.dropna(how="all")