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changeset 118:6e1a6e480969 draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 16:32:08 +0000
parents 69190617d1ea
children 829ea241c3a1
files COBRAxy/ras_to_bounds.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/ras_to_bounds.py	Sun Oct 13 16:27:27 2024 +0000
+++ b/COBRAxy/ras_to_bounds.py	Sun Oct 13 16:32:08 2024 +0000
@@ -178,9 +178,6 @@
         pd.DataFrame: DataFrame containing the bounds of reactions in the model.
     """
     rxns_ids = [rxn.id for rxn in model.reactions]
-
-    warning(str(model.reactions.get_by_id("EX_Lcystin_e").lower_bound))
-    warning(str(model.reactions.get_by_id("EX_Lcystin_e").upper_bound))
     
     # Set medium conditions
     for reaction, value in medium.items():
@@ -200,6 +197,9 @@
         model.reactions.get_by_id(reaction).lower_bound = float(df_FVA.loc[reaction, "minimum"])
         model.reactions.get_by_id(reaction).upper_bound = float(df_FVA.loc[reaction, "maximum"])
 
+    warning(str(model.reactions.get_by_id("EX_Lcystin_e").lower_bound))
+    warning(str(model.reactions.get_by_id("EX_Lcystin_e").upper_bound))
+
     if ras is not None:
         #Parallel(n_jobs=cpu_count())(delayed(process_ras_cell)(cellName, ras_row, model, rxns_ids, output_folder) for cellName, ras_row in ras.iterrows())
         for cellName, ras_row in ras.iterrows():