Mercurial > repos > bimib > cobraxy

changeset 265:bae18f67004c draft

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Uploaded
author francesco_lapi
date Tue, 04 Mar 2025 15:30:59 +0000
parents a4f02ba0f64c
children 0025449eadba
files COBRAxy/ras_generator.py
diffstat 1 files changed, 4 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/ras_generator.py	Tue Mar 04 15:27:22 2025 +0000
+++ b/COBRAxy/ras_generator.py	Tue Mar 04 15:30:59 2025 +0000
@@ -28,7 +28,7 @@
     
     parser.add_argument(
         '-rs', '--rules_selector', 
-        type = utils.Model, default = utils.Model.HMRcore, choices = list(utils.Model),
+        type = utils.Model, default = utils.Model.ENGRO2, choices = list(utils.Model),
         help = 'chose which type of dataset you want use')
     
     parser.add_argument("-rl", "--rule_list", type = str,
@@ -226,18 +226,16 @@
 
     if gene_dup:
         if gene_custom == None:
-            print(args.rules_selector)
-            print(str(args.rules_selector) == 'ENGRO2')
 
-            if args.rules_selector == 'HMRcore':
+            if str(args.rules_selector) == 'HMRcore':
                 print(1)
                 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/HMRcore_genes.p', 'rb'))
             
-            elif args.rules_selector == 'Recon':
+            elif str(args.rules_selector) == 'Recon':
                 print(2)
                 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb'))
             
-            elif args.rules_selector == 'ENGRO2':
+            elif str(args.rules_selector) == 'ENGRO2':
                 print(3)
                 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb'))