Mercurial > repos > bimib > cobraxy

changeset 537:f79250e824b5 draft

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Uploaded
author francesco_lapi
date Sat, 25 Oct 2025 11:05:14 +0000
parents 55fdc97cd95a
children fd53d42348bd
files COBRAxy/metabolicModel2Tabular.xml
diffstat 1 files changed, 11 insertions(+), 11 deletions(-) [+]
line wrap: on
line diff
--- a/COBRAxy/metabolicModel2Tabular.xml	Sat Oct 25 11:02:15 2025 +0000
+++ b/COBRAxy/metabolicModel2Tabular.xml	Sat Oct 25 11:05:14 2025 +0000
@@ -17,20 +17,20 @@
         --tool_dir $__tool_directory__
         --medium_selector $cond_model.cond_medium.medium_selector
         #if $cond_model.model_selector == 'Custom_model'
-            --input "$cond_model.input"
-            --name "$cond_model.input.element_identifier"
-            --out_tabular "$out_tabular_custom"
+            --input $cond_model.input
+            --name $cond_model.input.element_identifier
+            --out_tabular $out_tabular_custom
         #elif $cond_model.model_selector == 'ENGRO2'
-            --model "$cond_model.model_selector"
-            --name "$cond_model.model_selector"
-            --out_tabular "$out_tabular_engro2"
+            --model $cond_model.model_selector
+            --name $cond_model.model_selector
+            --out_tabular $out_tabular_engro2
         #else
-            --model "$cond_model.model_selector"
-            --name "$cond_model.model_selector"
-            --out_tabular "$out_tabular_recon"
+            --model $cond_model.model_selector
+            --name $cond_model.model_selector
+            --out_tabular $out_tabular_recon
         #end if
-        --gene_format "$cond_model.gene_format"
-        --out_log "$log"
+        --gene_format $cond_model.gene_format
+        --out_log $log
         ]]>
     </command>
     <inputs>