Mercurial > repos > bioinformatics_lab_ufsc > epibuilder

annotate test-data/command-epifinder-parameters.txt @ 1:57555f63bbd3 draft

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Deleted xml interface
author bioinformatics_lab_ufsc
date Thu, 25 Nov 2021 03:59:02 +0000
parents ef26009cd70a
children
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2 ---- Running Parameters ----
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3 BepiPred-2.0 Threshold : 0.6
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4 Min epitope length : 10
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5 Max epitope length : 30
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7 ---- Softwares Threshold ----
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8 Emini : 0.8
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9 Parker : 0.8
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10 Chou Fosman : 0.8
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11 Karplus Schulz : 0.8
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12 Kolaskar : 0.8
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14 ---- Proteomes ----
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15 Alias File
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16 test_proteom /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
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18 ---- Blast ----
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19 Identity : 90.0
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20 Cover : 90.0
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21 Word size : 4
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22 Task blastp-short: blastp-short
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24 ---- Stats ----
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25 Processed proteins : 6
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26 NGlycosylated proteins : 0
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27 Identified epitopes : 3
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28 N-glycosylated epitopes: 0