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view test-data/command-epifinder-parameters.txt @ 1:57555f63bbd3 draft

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Deleted xml interface
author bioinformatics_lab_ufsc
date Thu, 25 Nov 2021 03:59:02 +0000
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---- Running Parameters ----
BepiPred-2.0 Threshold : 0.6
Min epitope length     : 10
Max epitope length     : 30

---- Softwares Threshold ----
Emini                  : 0.8
Parker                 : 0.8
Chou Fosman            : 0.8
Karplus Schulz         : 0.8
Kolaskar               : 0.8

---- Proteomes ----
Alias          	File
test_proteom   	/usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta

---- Blast ----
Identity         : 90.0
Cover            : 90.0
Word size        : 4
Task blastp-short: blastp-short

---- Stats ----
Processed proteins     : 6
NGlycosylated proteins : 0
Identified epitopes    : 3
N-glycosylated epitopes: 0