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comparison test-data/command-epifinder-parameters.txt @ 4:8218eb024e5d draft default tip

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author bioinformatics_lab_ufsc
date Thu, 13 May 2021 18:37:32 +0000
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3:68bb74b57734 4:8218eb024e5d
1
2 ---- Running Parameters ----
3 BepiPred-2.0 Threshold : 0.6
4 Min epitope length : 10
5 Max epitope length : 30
6
7 ---- Softwares Threshold ----
8 Emini : 0.8
9 Parker : 0.8
10 Chou Fosman : 0.8
11 Karplus Schulz : 0.8
12 Kolaskar : 0.8
13
14 ---- Proteomes ----
15 Alias File
16 test_proteom /usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
17
18 ---- Blast ----
19 Identity : 90.0
20 Cover : 90.0
21 Word size : 4
22 Task blastp-short: blastp-short
23
24 ---- Stats ----
25 Processed proteins : 6
26 NGlycosylated proteins : 0
27 Identified epitopes : 3
28 N-glycosylated epitopes: 0