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diff test-data/command-epifinder-parameters.txt @ 4:8218eb024e5d draft default tip

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author bioinformatics_lab_ufsc
date Thu, 13 May 2021 18:37:32 +0000
parents 68bb74b57734
children
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--- a/test-data/command-epifinder-parameters.txt	Mon Mar 29 23:44:21 2021 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,28 +0,0 @@
-
----- Running Parameters ----
-BepiPred-2.0 Threshold : 0.6
-Min epitope length     : 10
-Max epitope length     : 30
-
----- Softwares Threshold ----
-Emini                  : 0.8
-Parker                 : 0.8
-Chou Fosman            : 0.8
-Karplus Schulz         : 0.8
-Kolaskar               : 0.8
-
----- Proteomes ----
-Alias          	File
-test_proteom   	/usr/local/bioinfo/stingrayGalaxy/tools/stingray/epifinder/test-data/proteom.fasta
-
----- Blast ----
-Identity         : 90.0
-Cover            : 90.0
-Word size        : 4
-Task blastp-short: blastp-short
-
----- Stats ----
-Processed proteins     : 6
-NGlycosylated proteins : 0
-Identified epitopes    : 3
-N-glycosylated epitopes: 0