Mercurial > repos > biopython > package_biopython_1_61

annotate tool_dependencies.xml @ 1:ededc5ef3fc0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
updated to point to the IUC account for external dependencies
author bgruening
date Mon, 12 Aug 2013 07:26:51 -0400
parents 5d0c54f7fea2
children b482933a6de5
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
1 <?xml version="1.0"?>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
2 <tool_dependency>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
3 <package name="numpy" version="1.7.1">
1
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
4 <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
0
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
5 </package>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
6 <package name="matplotlib" version="1.2.1">
1
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
7 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
0
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
8 </package>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
9 <!-- TODO reportlab -> Python Imaging Library
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
10 <package name="reportlab" version="1.2.1">
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
11 <repository name="package_reportlab_1_2" owner="bgruening" prior_installation_required="True" />
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
12 </package>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
13 -->
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
14 <package name="biopython" version="1.61">
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
15 <install version="1.0">
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
16 <actions>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
17 <action type="download_by_url">https://pypi.python.org/packages/source/b/biopython/biopython-1.61.tar.gz</action>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
18 <action type="set_environment_for_install">
1
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
19 <repository changeset_revision="9d164359606b" name="package_matplotlib_1_2" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
0
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
20 <package name="matplotlib" version="1.2.1" />
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
21 </repository>
1
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
22 <repository changeset_revision="c75482be1d3a" name="package_numpy_1_7" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
0
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
23 <package name="numpy" version="1.7.1" />
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
24 </repository>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
25 </action>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
26
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
27 <action type="make_directory">$INSTALL_DIR/lib/python</action>
1
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
28 <action type="shell_command">
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
29 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
30 export PATH=$PATH:$PATH_NUMPY &amp;&amp;
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
31 export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_MATPLOTLIB &amp;&amp;
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
32 python setup.py install --install-lib $INSTALL_DIR/lib/python
ededc5ef3fc0 updated to point to the IUC account for external dependencies
bgruening
parents: 0
diff changeset
33 </action>
0
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
34 <action type="set_environment">
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
35 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
36
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
37 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
38 <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
39 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
40
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
41 <environment_variable action="set_to" name="PYTHONPATH_BIOPYTHON">$INSTALL_DIR/lib/python</environment_variable>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
42 </action>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
43 </actions>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
44 </install>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
45 <readme>The PYTHONPATH for biopython can be accessed through PYTHONPATH_BIOPYTHON.</readme>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
46 </package>
5d0c54f7fea2 Uploaded
biopython
parents:
diff changeset
47 </tool_dependency>