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1 <tool id="stingray_Flash" name="Flash">
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2 <description>Flash</description>
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3
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4 <command interpreter="ruby">Flash_wrapper.rb $sequence1 $sequence2 $readLen $fragLen $maxOverlap $extended $not1 $not2</command>
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5
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6 <inputs>
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7 <param format="fastq" name="sequence1" type="data" label=""/>
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8 <param format="fastq" name="sequence2" type="data" label=""/>
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9 <param name="readLen" size="10" type="text" value="100">
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10 <label>Average read length</label>
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11 </param>
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12 <param name="fragLen" size="10" type="text" value="180">
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13 <label>Fragment length</label>
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14 </param>
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15 <param name="maxOverlap" size="10" type="text" value="70">
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16 <label>Maximum overlap length</label>
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17 </param>
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18
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19
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20 </inputs>
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21
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22 <outputs>
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23 <data format="fastq" name="not1" label="NotCombined1"/>
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24 <data format="fastq" name="not2" label="NotCombined2"/>
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25 <data format="fastq" name="extended" label="Combined Reads"/>
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26 </outputs>
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27
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28 <tests>
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29 <test>
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30 </test>
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31 </tests>
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32
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33 <help>
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34 </help>
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35
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36 </tool>
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37
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