Mercurial > repos > biowebdb > flash
changeset 0:79fa20b1445f draft
Initial version
author | biowebdb |
---|---|
date | Thu, 20 Mar 2014 14:57:43 -0400 |
parents | |
children | e70d522bcaae |
files | Flash.xml |
diffstat | 1 files changed, 37 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Flash.xml Thu Mar 20 14:57:43 2014 -0400 @@ -0,0 +1,37 @@ +<tool id="stingray_Flash" name="Flash"> + <description>Flash</description> + + <command interpreter="ruby">Flash_wrapper.rb $sequence1 $sequence2 $readLen $fragLen $maxOverlap $extended $not1 $not2</command> + + <inputs> + <param format="fastq" name="sequence1" type="data" label=""/> + <param format="fastq" name="sequence2" type="data" label=""/> + <param name="readLen" size="10" type="text" value="100"> + <label>Average read length</label> + </param> + <param name="fragLen" size="10" type="text" value="180"> + <label>Fragment length</label> + </param> + <param name="maxOverlap" size="10" type="text" value="70"> + <label>Maximum overlap length</label> + </param> + + + </inputs> + + <outputs> + <data format="fastq" name="not1" label="NotCombined1"/> + <data format="fastq" name="not2" label="NotCombined2"/> + <data format="fastq" name="extended" label="Combined Reads"/> + </outputs> + + <tests> + <test> + </test> + </tests> + + <help> + </help> + +</tool> +