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0
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1 CC=gcc
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2 CXX=g++
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3 CFLAGS=-O3 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wall #-DVERBOSE
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4 BIN=../bin
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5
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6 all: IMSAME revcomp combine covident
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7
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8
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9
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10 IMSAME: IMSAME.c
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11 $(CC) $(CFLAGS) alignmentFunctions.c -lpthread -lm commonFunctions.c -msse -lm IMSAME.c -lpthread -lm -o $(BIN)/IMSAME
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12
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13 revcomp: reverseComplement.c
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14 $(CC) $(CFLAGS) commonFunctions.c -lm reverseComplement.c -o $(BIN)/revComp
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15
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16 combine: combine_reads.c
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17 $(CC) $(CFLAGS) commonFunctions.c -lm combine_reads.c -o $(BIN)/combine
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18
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19 covident: covident.c
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20 $(CC) $(CFLAGS) covident.c -o $(BIN)/combine
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21
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22 clean:
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23 rm -rf $(BIN)/IMSAME $(BIN)/revComp $(BIN)/combine
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