Mercurial > repos > bitlab > plidflow

diff PLIDflow/scripts/separateChain.sh @ 0:6fcfa4756040 draft

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author bitlab
date Tue, 14 Jan 2020 06:09:42 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PLIDflow/scripts/separateChain.sh	Tue Jan 14 06:09:42 2020 -0500
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+# Arguments
+# $1 = pdb
+
+grep "ATOM\|HETATM" $1 | awk '{ if(length($5)==1) updateName=$5;   if($1 == "ATOM" || $1 == "HETATM"){ print $0 > "chain"updateName".pdb";  }}' ; 
+for i in chain* ; do echo "TER" >> $i ; echo "END" >> $i ; done