--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PLIDflow/separate_chain_plidflow.xml	Wed Apr 22 06:12:00 2020 -0400
@@ -0,0 +1,18 @@
+<tool id="separate_chain_plidflow" name="PLIDflow: Separate Chains">
+  <description>Separates chains from a PDB into multiple files</description>
+  <inputs>
+	  <param name="pdb" type="data" format="pdb" label="PDB file" help="PDB file to be separated into chains"/>
+  </inputs>
+  <command><![CDATA[
+	  
+	  ${__tool_directory__}/scripts/separateChain.sh ${pdb};
+	  
+  
+	]]></command>
+  <outputs>
+	  <data name="Chains" format="pdb">
+		       <discover_datasets pattern="(?P&lt;designation&gt;.+)\.pdb" format="pdb" directory="." visible="true" />
+		  <!-- <discover_datasets pattern="(chain)([a-zA-Z0-9]+)[.](pdb)" format="pdb" directory="." visible="true" /> -->
+          </data>
+  </outputs>
+</tool>