Mercurial > repos > bjoern-gruening > augustus

comparison tool_dependencies.xml @ 4:796814f16b12

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
author bjoern-gruening
date Tue, 30 Oct 2012 06:29:50 -0400
parents
children a4fab0c1ae1a
comparison
equal deleted inserted replaced
2:d5d5999ff4f1 4:796814f16b12
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="augustus" version="2.6.1">
4 <install version="1.0">
5 <actions>
6 <!-- the first command puts us in the dir for the package name: "augustus"-->
7 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
8 <action type="shell_command">make</action>
9 <action type="move_directory_files">
10 <source_directory>bin</source_directory>
11 <destination_directory>$INSTALL_DIR/bin</destination_directory>
12 </action>
13 <action type="move_directory_files">
14 <source_directory>scripts</source_directory>
15 <destination_directory>$INSTALL_DIR/scripts</destination_directory>
16 </action>
17 <action type="move_directory_files">
18 <source_directory>config</source_directory>
19 <destination_directory>$INSTALL_DIR/config</destination_directory>
20 </action>
21 <action type="set_environment">
22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
23 </action>
24 <action type="set_environment">
25 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
26 </action>
27 <action type="set_environment">
28 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
29 </action>
30 </actions>
31 </install>
32 <readme>http://augustus.gobics.de/binaries/README.TXT</readme>
33 </package>
34 </tool_dependency>