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annotate tool_dependencies.xml @ 4:796814f16b12

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Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
author bjoern-gruening
date Tue, 30 Oct 2012 06:29:50 -0400
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children a4fab0c1ae1a
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796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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1 <?xml version="1.0"?>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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2 <tool_dependency>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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3 <package name="augustus" version="2.6.1">
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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4 <install version="1.0">
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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5 <actions>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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6 <!-- the first command puts us in the dir for the package name: "augustus"-->
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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7 <action type="download_by_url">http://bioinf.uni-greifswald.de/augustus/binaries/augustus.2.6.1.tar.gz</action>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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8 <action type="shell_command">make</action>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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9 <action type="move_directory_files">
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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10 <source_directory>bin</source_directory>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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11 <destination_directory>$INSTALL_DIR/bin</destination_directory>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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12 </action>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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13 <action type="move_directory_files">
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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14 <source_directory>scripts</source_directory>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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15 <destination_directory>$INSTALL_DIR/scripts</destination_directory>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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16 </action>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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17 <action type="move_directory_files">
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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18 <source_directory>config</source_directory>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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19 <destination_directory>$INSTALL_DIR/config</destination_directory>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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20 </action>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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21 <action type="set_environment">
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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22 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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23 </action>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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24 <action type="set_environment">
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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25 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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26 </action>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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27 <action type="set_environment">
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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28 <environment_variable name="AUGUSTUS_CONFIG_PATH" action="set_to">$INSTALL_DIR/config</environment_variable>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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29 </action>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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30 </actions>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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31 </install>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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32 <readme>http://augustus.gobics.de/binaries/README.TXT</readme>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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33 </package>
796814f16b12 Add tool_dependencies.xml and update to new augustus version. Thanks to James Johnson for the patch.
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34 </tool_dependency>