Mercurial > repos > bjoern-gruening > glimmer_hmm

diff glimmerHMM/glimmerhmm_to_sequence.xml @ 0:0a15677c6668 default tip

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author bjoern-gruening
date Wed, 11 Jan 2012 09:58:35 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/glimmerHMM/glimmerhmm_to_sequence.xml	Wed Jan 11 09:58:35 2012 -0500
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+<tool id="glimmerhmm_to_sequence" name="GlimmerHMM to Sequence" version="0.1">
+    <description>converter</description>
+    <command interpreter='python'>glimmerhmm_to_sequence.py 
+    $glimmerhmm_input
+    $genome_input
+    $output
+    $to_protein
+    </command>
+    <inputs>
+        <param name="genome_input" type="data" format="fasta" label="Genome Sequence" />
+        <param name="glimmerhmm_input" type="data" format="gff" label="GlimmerHmm result File" />
+        <param name="to_protein" type="boolean" label="Convert to protein sequence" truevalue="True" falsevalue="False" checked="false" />
+    </inputs>
+    <outputs>
+        <data name="output" format="fasta" />
+    </outputs>
+    <help>
+
+**What it does**
+
+It converts the GlimmerHMM GFF output to a Fasta File.
+
+    </help>
+</tool>