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author bjoern-gruening
date Wed, 11 Jan 2012 04:50:59 -0500
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1 Galaxy wrapper for RepeatMasker
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2 =====================================
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4 This wrapper is copyright 2012 by Björn Grüning.
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6 This is a wrapper for the command line tool of RepeatMasker from the Institute for Systems Biology.
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7 http://www.repeatmasker.org/
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10 Smit, AFA, Hubley, R & Green, P. RepeatMasker Open-3.0.
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11 1996-2010 <http://www.repeatmasker.org>.
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14 Additional Information:
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15 Using RepeatMasker to identify repetitive elements in genomic sequences.
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16 http://www.ncbi.nlm.nih.gov/pubmed/19274634
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19 Installation
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20 ============
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22 To install RepeatMasker, please use the following instructions:
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24 http://www.repeatmasker.org/RMDownload.html
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26 To install the wrapper copy the file RepeatMasker.xml in the galaxy tools
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27 folder and modify the tools_conf.xml file to make the tool available to Galaxy.
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28 Add a line like the following:
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30 <tool file="RepeatMasker/RepeatMasker.xml" />
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33 History
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34 =======
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36 v0.1 - Initial public release
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39 Wrapper Licence (MIT/BSD style)
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40 ===============================
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42 Permission to use, copy, modify, and distribute this software and its
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43 documentation with or without modifications and for any purpose and
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44 without fee is hereby granted, provided that any copyright notices
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45 appear in all copies and that both those copyright notices and this
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46 permission notice appear in supporting documentation, and that the
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47 names of the contributors or copyright holders not be used in
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48 advertising or publicity pertaining to distribution of the software
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49 without specific prior permission.
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51 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
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52 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
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53 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
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54 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
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55 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
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56 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
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57 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
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58 OR PERFORMANCE OF THIS SOFTWARE.
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