Mercurial > repos > bjoern-gruening > repeat_masker
comparison readme.txt @ 0:13df908a02b0
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| author | bjoern-gruening |
|---|---|
| date | Wed, 11 Jan 2012 04:50:59 -0500 |
| parents | |
| children | f8f1a3878edd |
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| 1 Galaxy wrapper for RepeatMasker | |
| 2 ===================================== | |
| 3 | |
| 4 This wrapper is copyright 2012 by Björn Grüning. | |
| 5 | |
| 6 This is a wrapper for the command line tool of RepeatMasker from the Institute for Systems Biology. | |
| 7 http://www.repeatmasker.org/ | |
| 8 | |
| 9 | |
| 10 Smit, AFA, Hubley, R & Green, P. RepeatMasker Open-3.0. | |
| 11 1996-2010 <http://www.repeatmasker.org>. | |
| 12 | |
| 13 | |
| 14 Additional Information: | |
| 15 Using RepeatMasker to identify repetitive elements in genomic sequences. | |
| 16 http://www.ncbi.nlm.nih.gov/pubmed/19274634 | |
| 17 | |
| 18 | |
| 19 Installation | |
| 20 ============ | |
| 21 | |
| 22 To install RepeatMasker, please use the following instructions: | |
| 23 | |
| 24 http://www.repeatmasker.org/RMDownload.html | |
| 25 | |
| 26 To install the wrapper copy the file RepeatMasker.xml in the galaxy tools | |
| 27 folder and modify the tools_conf.xml file to make the tool available to Galaxy. | |
| 28 Add a line like the following: | |
| 29 | |
| 30 <tool file="RepeatMasker/RepeatMasker.xml" /> | |
| 31 | |
| 32 | |
| 33 History | |
| 34 ======= | |
| 35 | |
| 36 v0.1 - Initial public release | |
| 37 | |
| 38 | |
| 39 Wrapper Licence (MIT/BSD style) | |
| 40 =============================== | |
| 41 | |
| 42 Permission to use, copy, modify, and distribute this software and its | |
| 43 documentation with or without modifications and for any purpose and | |
| 44 without fee is hereby granted, provided that any copyright notices | |
| 45 appear in all copies and that both those copyright notices and this | |
| 46 permission notice appear in supporting documentation, and that the | |
| 47 names of the contributors or copyright holders not be used in | |
| 48 advertising or publicity pertaining to distribution of the software | |
| 49 without specific prior permission. | |
| 50 | |
| 51 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL | |
| 52 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED | |
| 53 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE | |
| 54 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT | |
| 55 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS | |
| 56 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE | |
| 57 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE | |
| 58 OR PERFORMANCE OF THIS SOFTWARE. | |
| 59 |