Mercurial > repos > blankenberg > naive_variant_caller
diff test-data/fake_phiX174_reads_1_test_out_1.vcf @ 1:ae6edc0012ba
Populate naive_variant_caller repository.
author | Daniel Blankenberg <dan@bx.psu.edu> |
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date | Thu, 29 Aug 2013 10:54:14 -0400 |
parents | |
children | 07e71cf6c8ef |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fake_phiX174_reads_1_test_out_1.vcf Thu Aug 29 10:54:14 2013 -0400 @@ -0,0 +1,51 @@ +##fileformat=VCFv4.1 +##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> +##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed"> +##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> +##FORMAT=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed"> +##FORMAT=<ID=AF,Number=.,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed"> +##FORMAT=<ID=NC,Number=.,Type=String,Description="Nucleotide and indel counts"> +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A Fake phiX Sample +phiX174 1411 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=1, +phiX174 1412 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=3, +phiX174 1413 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=5, +phiX174 1414 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=6, +phiX174 1415 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=7, +phiX174 1416 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=8, +phiX174 1417 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=9, +phiX174 1418 . T . . . AC=;AF= GT:AC:AF:NC 0/0:::T=10, +phiX174 1419 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=10, +phiX174 1420 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=10, +phiX174 1421 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=10, +phiX174 1422 . T . . . AC=;AF= GT:AC:AF:NC 0/0:::T=10, +phiX174 1423 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=10, +phiX174 1424 . C A . . AC=7;AF=0.7 GT:AC:AF:NC 1/0:7:0.7:A=7,C=3, +phiX174 1425 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=10, +phiX174 1426 . T . . . AC=;AF= GT:AC:AF:NC 0/0:::T=10, +phiX174 1427 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=10, +phiX174 1428 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=10, +phiX174 1429 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=10, +phiX174 1430 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=10, +phiX174 1431 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=10, +phiX174 1432 . T . . . AC=;AF= GT:AC:AF:NC 0/0:::T=10, +phiX174 1433 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=10, +phiX174 1434 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=10, +phiX174 1435 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=10, +phiX174 1436 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=10, +phiX174 1437 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=10, +phiX174 1438 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=10, +phiX174 1439 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=10, +phiX174 1440 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=10, +phiX174 1441 . T . . . AC=;AF= GT:AC:AF:NC 0/0:::T=10, +phiX174 1442 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=10, +phiX174 1443 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=10, +phiX174 1444 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=10, +phiX174 1445 . C . . . AC=;AF= GT:AC:AF:NC 0/0:::C=10, +phiX174 1446 . C T . . AC=3;AF=0.3 GT:AC:AF:NC 0/1:3:0.3:C=7,T=3, +phiX174 1447 . T A . . AC=2;AF=0.222222222222 GT:AC:AF:NC 0/0:2:0.222222222222:A=2,T=7, +phiX174 1448 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=7, +phiX174 1449 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=5, +phiX174 1450 . T . . . AC=;AF= GT:AC:AF:NC 0/0:::T=4, +phiX174 1451 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=3, +phiX174 1452 . A . . . AC=;AF= GT:AC:AF:NC 0/0:::A=2, +phiX174 1453 . G . . . AC=;AF= GT:AC:AF:NC 0/0:::G=1,