Mercurial > repos > blankenberg > package_pybamtools_0_0_2
changeset 0:38fc6b348c17 draft
planemo upload for repository https://github.com/blankenberg/tools-blankenberg/tree/master/packages/package_pybamtools_0_0_2 commit cf5c0f6fb2651adf72e317a1cf77805fca30d84e-dirty
author | blankenberg |
---|---|
date | Thu, 17 Sep 2015 13:30:25 -0400 |
parents | |
children | 6819855ac2e8 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 18 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Sep 17 13:30:25 2015 -0400 @@ -0,0 +1,18 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="pyBamTools" version="0.0.2"> + <install version="1.0"> + <actions> + <action type="shell_command">hg clone -r ba0341816b15fff5e0a554658d6579a60e1b12b1 https://bitbucket.org/dan/pybamtools pyBamTools</action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command">export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && python setup.py install --home $INSTALL_DIR</action> + <action type="set_environment"> + <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + <readme> +Installs pyBamTools libraries. + </readme> + </package> +</tool_dependency>