--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/rRNA_databases.loc.sample	Tue Apr 30 13:12:35 2013 -0400
@@ -0,0 +1,26 @@
+#This is a sample file distributed with Galaxy that is used to define a
+#list of public ribosomal databases, using three columns tab separated
+#(longer whitespace are TAB characters):
+#
+#<unique_id>    <database_caption>      <base_name_path>
+#
+#It is important that the actual database name does not have a space in it,
+#and that the first tab that appears in the line is right before the path.
+#
+#So, for example, if your database is rfam-5.8s and the path to your base name
+#is /data/rRNA_databases/rfam-5.8s, then the rRNA_databases.loc entry would look like this:
+#
+#rfam-5.8s          Rfam 5.8S eukarya            /data/rRNA_databases/rfam-5.8s
+#
+#Since SortMeRNA comes bundled with eight ribosomal databases, which are ready
+#for use after the tool installation, this sample file is in fact an actual file
+#to save the user the trouble of setting it.
+#
+rfam-5.8s	Rfam 5.8S eukarya	$SORTMERNADIR/rRNA_databases/rfam-5.8s-database-id98.fasta
+rfam-5s	Rfam 5S archaea/bacteria	$SORTMERNADIR/rRNA_databases/rfam-5s-database-id98.fasta
+silva-arc-16s	SILVA 16S archaea	$SORTMERNADIR/rRNA_databases/silva-arc-16s-database-id95.fasta
+silva-arc-23s	SILVA 16S bacteria	$SORTMERNADIR/rRNA_databases/silva-arc-23s-database-id98.fasta
+silva-bac-16s	SILVA 16S bacteria	$SORTMERNADIR/rRNA_databases/silva-bac-16s-database-id85.fasta
+silva-bac-23s	SILVA 23S bacteria	$SORTMERNADIR/rRNA_databases/silva-bac-23s-database-id98.fasta
+silva-euk-18s	SILVA 18S eukarya	$SORTMERNADIR/rRNA_databases/silva-euk-18s-database-id95.fasta
+silva-euk-28s	SILVA 28S eukarya	$SORTMERNADIR/rRNA_databases/silva-euk-28s-database-id98.fasta