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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="readline" version="6.2">
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4 <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="ape" version="3.0-8">
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7 <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
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8 </package>
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1
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9 <package name="R" version="2.15.0">
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10 <repository changeset_revision="eca882dd6393" name="package_r_2_15_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="rpy2" version="2.2.6">
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13 <install version="1.0">
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14 <actions>
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15 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action>
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16 <action type="set_environment_for_install">
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17 <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu">
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18 <package name="readline" version="6.2" />
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19 </repository>
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1
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20 <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu">
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21 <package name="ape" version="3.0-8" />
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22 </repository>
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23 <repository changeset_revision="eca882dd6393" name="package_r_2_15_0" owner="boris" toolshed="http://toolshed.g2.bx.psu.edu">
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24 <package name="R" version="2.15.0" />
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25 </repository>
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26 </action>
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27 <action type="make_directory">$INSTALL_DIR/lib/python</action>
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28 <action type="shell_command">
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2
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29 export PYTHONPATH=$INSTALL_DIR/lib/python &&
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30 export CFLAGS="-I$READLINE_INCLUDES" &&
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31 export LDFLAGS="-L$READLINE_LIBS" &&
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32 python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin
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33 </action>
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34 <action type="set_environment">
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35 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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37 </action>
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38 </actions>
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39 </install>
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40 <readme>In order to upgrade one will have to first remove older installed rpy2 packages then and only then install the recent version of rpy2 wished.
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41 Python version 2.5 or greater, as well as R-2.8.0 or greater are required.
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42 When compiling R from source, do not forget to specify –enable-R-shlib at the ./configure step.
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43 gcc-4.4 is used for compiling the C parts on Linux.
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44 If installing from a linux distribution, the Python-dev package will obviously be required to compile rpy2
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45 On OS X, the XCode tools will be required in order to compile rpy2.</readme>
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46 </package>
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47 </tool_dependency>
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