Mercurial > repos > boris > package_rpy2_2_2
changeset 0:31bb8a2b748e draft
Uploaded xml
| author | boris |
|---|---|
| date | Mon, 03 Feb 2014 12:59:12 -0500 |
| parents | |
| children | 58279878f849 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 39 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Feb 03 12:59:12 2014 -0500 @@ -0,0 +1,39 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="readline" version="6.2"> + <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="ape" version="3.0-8"> + <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="rpy2" version="2.2.6"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.2.6.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="ff20613e6fee" name="package_readline_6_2" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> + <package name="readline" version="6.2" /> + </repository> + <repository changeset_revision="423395d792df" name="package_ape_3_0" owner="boris" toolshed="http://testtoolshed.g2.bx.psu.edu/"> + <package name="ape" version="3.0-8" /> + </repository> + </action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command">export R_HOME=$R_HOME && export R_LIBS=$R_LIBS && export PATH=$PATH &&export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &&python setup.py install --home $INSTALL_DIR --install-scripts $INSTALL_DIR/bin</action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="R_HOME">$ENV[R_HOME]</environment_variable> + <environment_variable action="prepend_to" name="R_LIBS">$ENV[R_LIBS]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[PATH]</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme>In order to upgrade one will have to first remove older installed rpy2 packages then and only then install the recent version of rpy2 wished. + Python version 2.5 or greater, as well as R-2.8.0 or greater are required. + When compiling R from source, do not forget to specify –enable-R-shlib at the ./configure step. + gcc-4.4 is used for compiling the C parts on Linux. + If installing from a linux distribution, the Python-dev package will obviously be required to compile rpy2 + On OS X, the XCode tools will be required in order to compile rpy2.</readme> + </package> +</tool_dependency>