--- a/dotplot_runner.xml	Fri Jan 29 10:00:21 2016 -0500
+++ b/dotplot_runner.xml	Fri Jan 29 10:14:36 2016 -0500
@@ -38,5 +38,25 @@
     </test>
   </tests>
   <help>
+**Running ProHits DotPlot**
+
+This runs the biclustering version of the DotPlot tool found at http://prohitstools.mshri.on.ca/. A more interactive version can be found at http://prohits-viz.lunenfeld.ca/. 
+
+INPUTS:
+
+Saint Output: SAINTexpress generated "list.txt" file.
+
+Primary False Discovery Rate
+
+Secondary False Discovery Rate
+
+Maximum Spectral Count
+
+------
+
+**Please cite** 
+
+ * Knight, J.D., Liu, G., Zhang, J., Pasculescu, A., Choi, H., and Gingras, A.-C. (2014) A web-tool for visualizing quantitative protein-protein interaction data. Proteomics, in press. PMID:25422071. 
+
   </help>
 </tool>
\ No newline at end of file