Mercurial > repos > brad-chapman > bam_to_bigwig

comparison bam_to_bigwig/README.txt @ 1:0ff100a057ef

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Migrated tool version 0.0.2 from old tool shed archive to new tool shed repository
author brad-chapman
date Tue, 07 Jun 2011 16:26:46 -0400
parents d2c1af657010
children e2edfa478eb4
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0:d2c1af657010 1:0ff100a057ef
6 6
7 The latest version of the bam_to_wiggle.py script is available at: 7 The latest version of the bam_to_wiggle.py script is available at:
8 8
9 https://github.com/chapmanb/bcbb/blob/master/nextgen/scripts/bam_to_wiggle.py 9 https://github.com/chapmanb/bcbb/blob/master/nextgen/scripts/bam_to_wiggle.py
10 10
11 Place the script in the same directory as the XML configuration file, or
12 provide a soft link to it.
13
11 This requires: 14 This requires:
12 15
13 Python2, version 2.6 or better 16 Python2, version 2.6 or better
14 pysam (http://code.google.com/p/pysam/) 17 pysam (http://code.google.com/p/pysam/)
15 wigToBigWig from UCSC (http://hgdownload.cse.ucsc.edu/admin/exe/) 18 wigToBigWig from UCSC (http://hgdownload.cse.ucsc.edu/admin/exe/)