annotate test-data/res_files/reads-sample-small.fastq-piRNAs-PPP.html @ 67:740884893563 draft

planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit fa75629bca78685de0106390758c0e85f1ca0836
author brasset_jensen
date Thu, 31 Jan 2019 16:10:58 -0500
parents 11708af40030
children
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2 <!DOCTYPE html>
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3 <html lang="en">
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4 <head>
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5 <meta charset="utf-8">
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6 <title>pipeline</title>
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7 <meta name="viewport" content="width=device-width, initial-scale=1.0">
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8 <meta name="description" content="">
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9 <meta name="author" content="">
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10 <!-- Le styles -->
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11 <link href="css/bootstrap.css" rel="stylesheet">
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12 <link href="css/bootstrap-table.css" rel="stylesheet">
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13 <style type="text/css">
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17 }
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26 }
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68 height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */
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69 }
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70 div.slideshow {
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79 }
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80 div.slideshow a.advance-link {
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81 display: block;
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82 width: 550px;
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83 height: 502px; /* This should be set to be at least the height of the largest image in the slideshow */
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85 text-align: center;
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86 }
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88 text-decoration: none;
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90 div.slideshow img {
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134 div.pagination {
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137 div.navigation div.top {
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150 }
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151 div.pagination a:hover {
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155 div.pagination span.current {
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160 }
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174 }
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175 span.image-caption {
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177 position: absolute;
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178 width: 550px;
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181 }
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182 div.caption {
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183 padding: 12px;
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185
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186 /* Featurettes
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189 .featurette {
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190 padding-top: 20px; /* Vertically center images part 1: add padding above and below text. */
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pierre.pouchin
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191 overflow: hidden; /* Vertically center images part 2: clear their floats. */
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192 text-align: center;
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pierre.pouchin
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193 }
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194
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pierre.pouchin
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195 .featurette-p
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pierre.pouchin
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196 {
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197 text-align: left;
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pierre.pouchin
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198 }
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pierre.pouchin
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199
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pierre.pouchin
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200 .featurette-image {
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pierre.pouchin
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201 margin-top: 10px; /* Vertically center images part 3: negative margin up the image the same amount of the padding to center it. */
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202 width: 450px;
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pierre.pouchin
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203 height: auto;
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pierre.pouchin
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204 }
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205
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pierre.pouchin
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206 </style>
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pierre.pouchin
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207 <link href="css/bootstrap-responsive.css" rel="stylesheet">
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pierre.pouchin
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208 </head>
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pierre.pouchin
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209 <body>
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pierre.pouchin
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210
9185ca0a7b43 Updated package according to recommendations.
pierre.pouchin
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211 <div class="navbar navbar-inverse navbar-fixed-top">
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pierre.pouchin
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212 <div class="navbar-inner">
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pierre.pouchin
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213 <div class="container">
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pierre.pouchin
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214 <button type="button" class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
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pierre.pouchin
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215 <span class="icon-bar"></span>
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pierre.pouchin
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216 <span class="icon-bar"></span>
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pierre.pouchin
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217 <span class="icon-bar"></span>
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pierre.pouchin
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218 </button>
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pierre.pouchin
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219 <a class="brand" href="report.txt">Report</a>
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pierre.pouchin
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220 <div class="nav-collapse collapse">
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pierre.pouchin
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221 <ul class="nav">
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pierre.pouchin
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222 <li class="active"><a href="reads-sample-small.fastq.html">reads-sample-small.fastq</a></li>
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pierre.pouchin
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223 </ul>
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pierre.pouchin
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224 </div><!--/.nav-collapse -->
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pierre.pouchin
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225 </div>
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pierre.pouchin
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226 </div>
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pierre.pouchin
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227 </div><div class="container"> <table class="wb-tables table table-striped table-hover">
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pierre.pouchin
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228 <thead>
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pierre.pouchin
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229 <tr>
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pierre.pouchin
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230 <th data-sortable="true">ID</th>
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pierre.pouchin
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231 <th data-sortable="true">overlap sum</th>
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pierre.pouchin
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232 <th data-sortable="true">ten overlap sum</th>
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pierre.pouchin
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233 <th data-sortable="true">mean</th>
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pierre.pouchin
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234 <th data-sortable="true">standard deviation</th>
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pierre.pouchin
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235 <th data-sortable="true">z-score</th>
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pierre.pouchin
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236 <th data-sortable="true">p-value</th>
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pierre.pouchin
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237 </tr>
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pierre.pouchin
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238 </thead>
63
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239 <tbody><tr><td> BATUMI_I </td>
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240 <td> 0 </td><td> 0 </td><td> 0 </td><td> 0 </td><td> NA </td><td> NA </td>
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241 </tr><tr><td> BATUMI_LTR </td>
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242 <td> 0 </td><td> 0 </td><td> 0 </td><td> 0 </td><td> NA </td><td> NA </td>
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243 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/BS2.html">BS2</a> </td><td> 185 </td><td> 51 </td><td> 8.04347826086956 </td><td> 9.6028902391509 </td><td> 4.47329092276793 </td><td> 3.85124343149634e-06 </td>
61
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pierre.pouchin
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244 </tr><tr><td> COPIA_DM_I </td>
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pierre.pouchin
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245 <td> 0 </td><td> 0 </td><td> 0 </td><td> 0 </td><td> NA </td><td> NA </td>
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pierre.pouchin
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246 </tr><tr><td> COPIA_DM_LTR </td>
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pierre.pouchin
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247 <td> 0 </td><td> 0 </td><td> 0 </td><td> 0 </td><td> NA </td><td> NA </td>
63
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248 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/DMCR1A.html">DMCR1A</a> </td><td> 8 </td><td> 1 </td><td> 0.347826086956522 </td><td> 0.560178205509788 </td><td> 1.1642257885595 </td><td> 0.122166260952844 </td>
11708af40030 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a461e07471d3897046e14389171a2c03d09b912d
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249 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/DMRT1B.html">DMRT1B</a> </td><td> 13 </td><td> 1 </td><td> 0.565217391304348 </td><td> 0.711769806249778 </td><td> 0.610847221781526 </td><td> 0.270650364023612 </td>
11708af40030 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a461e07471d3897046e14389171a2c03d09b912d
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250 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/FW.html">FW</a> </td><td> 369 </td><td> 54 </td><td> 16.0434782608696 </td><td> 9.77342564156839 </td><td> 3.88364562551062 </td><td> 5.14509267872665e-05 </td>
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251 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/G6_DM.html">G6_DM</a> </td><td> 58 </td><td> 9 </td><td> 2.52173913043478 </td><td> 3.95484914478846 </td><td> 1.63805511471961 </td><td> 0.0507050985511251 </td>
61
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pierre.pouchin
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252 </tr><tr><td> Gypsy2-I_DM </td>
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pierre.pouchin
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253 <td> 0 </td><td> 0 </td><td> 0 </td><td> 0 </td><td> NA </td><td> NA </td>
63
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254 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/Gypsy2-LTR_DM.html">Gypsy2-LTR_DM</a> </td><td> 3 </td><td> 0 </td><td> 0.130434782608696 </td><td> 0.336781160539775 </td><td> -0.387298334620742 </td><td> 0.650732320848331 </td>
11708af40030 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a461e07471d3897046e14389171a2c03d09b912d
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255 </tr><tr><td> I_DM </td>
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256 <td> 0 </td><td> 0 </td><td> 0 </td><td> 0 </td><td> NA </td><td> NA </td>
11708af40030 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a461e07471d3897046e14389171a2c03d09b912d
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257 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/MAX_I.html">MAX_I</a> </td><td> 1 </td><td> 0 </td><td> 0.0434782608695652 </td><td> 0.203931119992323 </td><td> -0.21320071635561 </td><td> 0.584414795229119 </td>
11708af40030 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a461e07471d3897046e14389171a2c03d09b912d
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258 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/MAX_LTR.html">MAX_LTR</a> </td><td> 1 </td><td> 0 </td><td> 0.0434782608695652 </td><td> 0.203931119992323 </td><td> -0.21320071635561 </td><td> 0.584414795229119 </td>
11708af40030 planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit a461e07471d3897046e14389171a2c03d09b912d
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259 </tr><tr><td> <a href="reads-sample-small.fastq/subgroups/PPPartners/PROTOP.html">PROTOP</a> </td><td> 3 </td><td> 2 </td><td> 0.130434782608696 </td><td> 0.447636093086391 </td><td> 4.17652920813624 </td><td> 1.47995375637811e-05 </td>
61
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260 </tr><tr><td> ZAM_I </td>
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pierre.pouchin
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261 <td> 0 </td><td> 0 </td><td> 0 </td><td> 0 </td><td> NA </td><td> NA </td>
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pierre.pouchin
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262 </tr><tr><td> ZAM_LTR </td>
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pierre.pouchin
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263 <td> 0 </td><td> 0 </td><td> 0 </td><td> 0 </td><td> NA </td><td> NA </td>
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pierre.pouchin
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264 </tr></tbody></table></div>
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pierre.pouchin
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265 <!-- FOOTER -->
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pierre.pouchin
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266 <div class="container">
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pierre.pouchin
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267 <footer>
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268
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pierre.pouchin
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269 </footer>
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pierre.pouchin
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270 </div>
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pierre.pouchin
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271 <!-- Le javascript
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pierre.pouchin
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272 ================================================== -->
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pierre.pouchin
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273 <!-- Placed at the end of the document so the pages load faster -->
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pierre.pouchin
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274 <script type="text/javascript" src="js/filter.js"></script>
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pierre.pouchin
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275 <script type="text/javascript" src="js/jquery.js"></script>
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pierre.pouchin
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276 <script type="text/javascript" src="js/jquery-1.3.2.js"></script>
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pierre.pouchin
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277 <script type="text/javascript" src="js/jquery.galleriffic.js"></script>
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pierre.pouchin
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278 <script type="text/javascript" src="js/jquery.opacityrollover.js"></script>
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pierre.pouchin
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279 <script type="text/javascript" src="js/bootstrap-table.js"></script>
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pierre.pouchin
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280 <script type="text/javascript" src="js/bootstrap.min.js"></script>
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pierre.pouchin
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281 <script type="text/javascript">
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pierre.pouchin
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282 jQuery(document).ready(function($) {
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pierre.pouchin
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283 // We only want these styles applied when javascript is enabled
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pierre.pouchin
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284 $('div.navigation').css({'width' : '300px', 'float' : 'left'});
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pierre.pouchin
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285 $('div.content').css('display', 'block');
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286
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pierre.pouchin
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287 $(".each-gallery").each(function(i){
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pierre.pouchin
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288 // Initially set opacity on thumbs and add
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pierre.pouchin
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289 // additional styling for hover effect on thumbs
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pierre.pouchin
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290 var onMouseOutOpacity = 0.67;
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pierre.pouchin
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291 $('#thumbs + i + ul.thumbs li').opacityrollover({
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pierre.pouchin
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292 mouseOutOpacity: onMouseOutOpacity,
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pierre.pouchin
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293 mouseOverOpacity: 1.0,
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pierre.pouchin
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294 fadeSpeed: 'fast',
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pierre.pouchin
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295 exemptionSelector: '.selected'
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pierre.pouchin
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296 });
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297
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pierre.pouchin
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298 // Initialize Advanced Galleriffic Gallery
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pierre.pouchin
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299 var gallery = $('#thumbs'+i).galleriffic({
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pierre.pouchin
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300 delay: 2500,
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pierre.pouchin
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301 numThumbs: 22,
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pierre.pouchin
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302 preloadAhead: 10,
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pierre.pouchin
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303 enableTopPager: true,
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pierre.pouchin
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304 enableBottomPager: true,
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pierre.pouchin
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305 maxPagesToShow: 7,
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pierre.pouchin
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306 imageContainerSel: '#slideshow'+ i,
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pierre.pouchin
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307 controlsContainerSel: '#controls' + i,
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pierre.pouchin
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308 captionContainerSel: '#caption' + i,
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pierre.pouchin
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309 loadingContainerSel: '#loading' + i,
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pierre.pouchin
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310 renderSSControls: true,
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pierre.pouchin
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311 renderNavControls: true,
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pierre.pouchin
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312 playLinkText: 'Play',
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pierre.pouchin
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313 pauseLinkText: 'Pause',
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pierre.pouchin
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314 prevLinkText: '&lsaquo; Previous',
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pierre.pouchin
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315 nextLinkText: 'Next &rsaquo;',
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pierre.pouchin
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316 nextPageLinkText: 'Next &rsaquo;',
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pierre.pouchin
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317 prevPageLinkText: '&lsaquo; Prev',
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pierre.pouchin
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318 enableHistory: false,
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pierre.pouchin
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319 autoStart: false,
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pierre.pouchin
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320 syncTransitions: true,
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pierre.pouchin
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321 defaultTransitionDuration: 900,
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pierre.pouchin
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322 onSlideChange: function(prevIndex, nextIndex) {
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pierre.pouchin
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323 // 'this' refers to the gallery, which is an extension of $('#thumbs')
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pierre.pouchin
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324 this.find('ul.thumbs').children()
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pierre.pouchin
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325 .eq(prevIndex).fadeTo('fast', onMouseOutOpacity).end()
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pierre.pouchin
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326 .eq(nextIndex).fadeTo('fast', 1.0);
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pierre.pouchin
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327 },
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pierre.pouchin
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328 onPageTransitionOut: function(callback) {
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pierre.pouchin
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329 this.fadeTo('fast', 0.0, callback);
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pierre.pouchin
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330 },
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pierre.pouchin
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331 onPageTransitionIn: function() {
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pierre.pouchin
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332 this.fadeTo('fast', 1.0);
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pierre.pouchin
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333 }
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pierre.pouchin
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334 });
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pierre.pouchin
parents:
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335 });
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pierre.pouchin
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336 });
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pierre.pouchin
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337 </script>
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pierre.pouchin
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338 </body>
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pierre.pouchin
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339 </html>
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pierre.pouchin
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340