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comparison sRNAPipe.xml @ 64:967512924317 draft

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planemo upload for repository https://github.com/GReD-Clermont/sRNAPipe/ commit 410509088292be0687b8da3ea3bb75e72866a87d
author brasset_jensen
date Mon, 28 Jan 2019 11:57:15 -0500
parents 11708af40030
children 0e9adbd82bb4
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63:11708af40030 64:967512924317
34 <requirement type="package" version="3.6">r-plotrix</requirement> 34 <requirement type="package" version="3.6">r-plotrix</requirement>
35 <requirement type="package" version="1.14.0">bioconductor-sushi</requirement> 35 <requirement type="package" version="1.14.0">bioconductor-sushi</requirement>
36 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement> 36 <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
37 <requirement type="package" version="2.2.1">r-ggplot2</requirement> 37 <requirement type="package" version="2.2.1">r-ggplot2</requirement>
38 </requirements> 38 </requirements>
39 <version_command>perl '$__tool_directory__/bin/sRNAPipe.pl'</version_command> 39 <version_command>perl '$__tool_directory__/bin/sRNAPipe.pl' | grep 'version' | grep "version" | cut -d ' ' -f 3</version_command>
40 <command detect_errors="aggressive"><![CDATA[ 40 <command detect_errors="aggressive"><![CDATA[
41 perl '$__tool_directory__/bin/sRNAPipe.pl' 41 perl '$__tool_directory__/bin/sRNAPipe.pl'
42 42
43 --fastq '${first_input}' 43 --fastq '${first_input}'
44 --fastq_n '${first_input.name}' 44 --fastq_n '${first_input.name}'