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comparison sRNAPipe.xml @ 58:e12ad81abcbb draft

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Added quotes around fastq_n parameter.
author pierre.pouchin
date Tue, 23 Oct 2018 10:36:18 -0400
parents fef39e626746
children eeb89c3331ad
comparison
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57:fef39e626746 58:e12ad81abcbb
3 <command interpreter="perl"> 3 <command interpreter="perl">
4 4
5 ./bin/sRNAPipe.pl 5 ./bin/sRNAPipe.pl
6 6
7 --fastq ${first_input} 7 --fastq ${first_input}
8 --fastq_n ${first_input.name} 8 --fastq_n "${first_input.name}"
9 #for $input_file in $input_files: 9 #for $input_file in $input_files:
10 --fastq ${input_file.additional_input} 10 --fastq ${input_file.additional_input}
11 --fastq_n ${input_file.additional_input.name} 11 --fastq_n "${input_file.additional_input.name}"
12 #end for 12 #end for
13 13
14 #if $Genome.refGenomeSource == "history": 14 #if $Genome.refGenomeSource == "history":
15 --ref "${Genome.ownFile}" 15 --ref "${Genome.ownFile}"
16 --build_index 16 --build_index