Mercurial > repos > brasset_jensen > srnapipe

changeset 34:54cb93674556 draft

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Uploaded
author brasset_jensen
date Sun, 17 Jun 2018 16:32:54 -0400
parents c1a5c5205b24
children 360ec0ae04c9
files bin/sRNAPipe.pl
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bin/sRNAPipe.pl	Fri Jun 01 18:17:59 2018 -0400
+++ b/bin/sRNAPipe.pl	Sun Jun 17 16:32:54 2018 -0400
@@ -206,7 +206,7 @@
 
 		my $ex_count_file =  $type_dir.$type_prefix.'transcripts_reads_counts.txt';
 		my ( $ex_count, $ex_ref_size ) =  sam_count ( $type_sam_transcripts );
-		rpms_rpkm( $ex_count, $ex_ref_size, $ma, $ex_count_file, $pi, $mi, $bo );
+		rpms_rpkm_te( $ex_count, $ex_ref_size, $ma, $ex_count_file, $pi, $mi, $bo );
 
 		my ( $TEs_count, $TEs_ref_size, $TEs_count_NoM, $TEs_count_M ) = sam_count_mis ( $type_sam_TEs );
 		my $TEs_count_file = $type_dir.$type_prefix.'TEs_reads_counts.txt';