Mercurial > repos > brenninc > package_pairedbamtobed12

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author brenninc
date Tue, 10 May 2016 12:32:13 -0400
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="ncurses" version="5.9">
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4 <repository changeset_revision="a6cbb3aaecf6" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="zlib" version="1.2.8">
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7 <repository changeset_revision="63a4a902cda2" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="samtools" version="1.2">
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10 <repository changeset_revision="f6ae3ba3f3c1" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="pairedbamtobed12" version="1.0">
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13 <install version="1.0">
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14 <actions>
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15 <!-- Original source https://github.com/Population-Transcriptomics/pairedBamToBed12 commit/8716972653757dbe828a4cff2e11337c12eaf75c -->
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16 <action type="download_by_url">https://raw.githubusercontent.com/Christian-B/galaxy_shedtools/master/package_pairedBamToBed12/pairedBamToBed12.tar.gz</action>
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17 <action type="shell_command">make</action>
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18 <action type="move_directory_files">
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19 <source_directory>bin</source_directory>
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20 <destination_directory>$INSTALL_DIR/bin</destination_directory>
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21 </action>
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22 <action type="set_environment">
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23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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24 <environment_variable action="set_to" name="PAIREDBAMTODEB12_ROOT">$INSTALL_DIR</environment_variable>
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25 </action>
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26 </actions>
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27 </install>
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28 <readme />
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29 </package>
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30 </tool_dependency>