Mercurial > repos > brigidar > sed_fasta
comparison sed-fasta.xml @ 0:80f990fb3ba6 draft
Uploaded
| author | brigidar |
|---|---|
| date | Tue, 06 Oct 2015 12:53:24 -0400 |
| parents | |
| children | 04871c6242d2 |
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| -1:000000000000 | 0:80f990fb3ba6 |
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| 1 <tool id="cat_list" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag"> | |
| 2 <description>tail-to-head</description> | |
| 3 <command> | |
| 4 cat $input1 | sed 's/gi.*gb\|//g' | sed 's/\|//g' >> $out_file1 </command> | |
| 5 <inputs> | |
| 6 <param name="input1" type="data" label="remove gi to gb characters" multiple="true" /> | |
| 7 </inputs> | |
| 8 <outputs> | |
| 9 <data name="out_file1" format="input" metadata_source="input1"/> | |
| 10 </outputs> | |
| 11 <tests> | |
| 12 </tests> | |
| 13 <help> | |
| 14 </help> | |
| 15 </tool> |