view sed-fasta.xml @ 1:04871c6242d2 draft default tip

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author brigidar
date Tue, 06 Oct 2015 13:05:50 -0400
parents 80f990fb3ba6
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<tool id="sed_fasta" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag" version="0.2">
    <description>remove leading characters fasta file</description>
    <command>
        cat $input1 | sed 's/gi.*gb[|]//g' | sed 's/[|]//g' >> $out_file1    </command>
    <inputs>
        <param name="input1" type="data" label="remove gi to gb characters" />
    </inputs>
    <outputs>
        <data name="out_file1" format="input" metadata_source="input1"/>
    </outputs>
    <tests>
    </tests>
    <help>
    </help>
</tool>