Mercurial > repos > brigidar > sed_fasta
view sed-fasta.xml @ 1:04871c6242d2 draft default tip
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author | brigidar |
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date | Tue, 06 Oct 2015 13:05:50 -0400 |
parents | 80f990fb3ba6 |
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<tool id="sed_fasta" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag" version="0.2"> <description>remove leading characters fasta file</description> <command> cat $input1 | sed 's/gi.*gb[|]//g' | sed 's/[|]//g' >> $out_file1 </command> <inputs> <param name="input1" type="data" label="remove gi to gb characters" /> </inputs> <outputs> <data name="out_file1" format="input" metadata_source="input1"/> </outputs> <tests> </tests> <help> </help> </tool>