Mercurial > repos > brigidar > sed_fasta
comparison sed-fasta.xml @ 1:04871c6242d2 draft default tip
Uploaded
| author | brigidar |
|---|---|
| date | Tue, 06 Oct 2015 13:05:50 -0400 |
| parents | 80f990fb3ba6 |
| children |
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| 0:80f990fb3ba6 | 1:04871c6242d2 |
|---|---|
| 1 <tool id="cat_list" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag"> | 1 <tool id="sed_fasta" name="remove leading characters in fasta downloaded from ncbi to match genbank locus tag" version="0.2"> |
| 2 <description>tail-to-head</description> | 2 <description>remove leading characters fasta file</description> |
| 3 <command> | 3 <command> |
| 4 cat $input1 | sed 's/gi.*gb\|//g' | sed 's/\|//g' >> $out_file1 </command> | 4 cat $input1 | sed 's/gi.*gb[|]//g' | sed 's/[|]//g' >> $out_file1 </command> |
| 5 <inputs> | 5 <inputs> |
| 6 <param name="input1" type="data" label="remove gi to gb characters" multiple="true" /> | 6 <param name="input1" type="data" label="remove gi to gb characters" /> |
| 7 </inputs> | 7 </inputs> |
| 8 <outputs> | 8 <outputs> |
| 9 <data name="out_file1" format="input" metadata_source="input1"/> | 9 <data name="out_file1" format="input" metadata_source="input1"/> |
| 10 </outputs> | 10 </outputs> |
| 11 <tests> | 11 <tests> |