Mercurial > repos > brigidar > select_product
view select_product.xml @ 8:53f1f83e80a1 draft
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author | brigidar |
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date | Fri, 09 Oct 2015 11:52:31 -0400 |
parents | 7d71f20d949e |
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<tool id="select_product" name="select_product" version="0.6"> <description>define product names to sort on and flanking region</description> <requirements> </requirements> <stdio> <exit_code range="1:" /> </stdio> <command interpreter="python"> select_product.py -g $input_file -n $number -k $keys_1 -o $output_file </command> <inputs> <param format="genbank" name="input_file" type="data" label="reference genbank file"/> <param name="number" type="integer" value="50" label="flanking region"/> <param name="keys_1" type="text" value="transposase" label="list of keys separated by comma of product names"/> </inputs> <outputs> <data format="tabular" name="output_file"> </data> </outputs> <tests> <!-- Empty --> </tests> <help> .. class:: infomark **What it does** Finds all CDS that match the key words provided in the comma separated argument -k in the product description adds a given number of bases on each side of the transcript for the exclusion set ------------- .. class:: infomark **Tool Author** Brigida Rusconi </help> </tool>