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7
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1 <tool id="select_product" name="select_product" version="0.6">
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3
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2 <description>define product names to sort on and flanking region</description>
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7
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3 <requirements> </requirements>
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4 <stdio>
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5 <exit_code range="1:" />
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6 </stdio>
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7
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4
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8 <command interpreter="python">
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9 select_product.py -g $input_file -n $number -k $keys_1 -o $output_file
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1
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10 </command>
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11
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12 <inputs>
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13 <param format="genbank" name="input_file" type="data" label="reference genbank file"/>
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14 <param name="number" type="integer" value="50" label="flanking region"/>
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15 <param name="keys_1" type="text" value="transposase" label="list of keys separated by comma of product names"/>
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1
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16 </inputs>
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17
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18
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19 <outputs>
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20 <data format="tabular" name="output_file">
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1
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21 </data>
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22
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23
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24 </outputs>
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25
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26 <tests>
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27 <!-- Empty -->
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28 </tests>
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29
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30 <help>
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31
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32 .. class:: infomark
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33
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34 **What it does**
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35
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3
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36
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37 Finds all CDS that match the key words provided in the comma separated argument -k in the product description adds a given number of bases on each side of the transcript for the exclusion set
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38
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2
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39
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1
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40 -------------
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41
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42 .. class:: infomark
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43
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44 **Tool Author**
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45
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46 Brigida Rusconi
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47
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48
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49 </help>
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50 </tool> |
