Mercurial > repos > brigidar > select_product

changeset 7:7d71f20d949e draft

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Uploaded
author brigidar
date Fri, 09 Oct 2015 11:52:18 -0400
parents 8eb1751dcfe7
children 53f1f83e80a1
files select_product.xml
diffstat 1 files changed, 10 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/select_product.xml	Thu Oct 08 23:05:56 2015 -0400
+++ b/select_product.xml	Fri Oct 09 11:52:18 2015 -0400
@@ -1,25 +1,23 @@
-<tool id="select_product" name="select_product" version="0.4">
+<tool id="select_product" name="select_product" version="0.6">
     <description>define product names to sort on and flanking region</description>
-    <requirements>
-           
-       </requirements>
+    <requirements> </requirements>
+    <stdio>
+        <exit_code range="1:" />
+    </stdio>
+    
     <command interpreter="python">
-        select_product.py
-        -g $input_file
-        -n $number
-        -k $keys
-        > output_file
+        select_product.py -g $input_file -n $number -k $keys_1 -o $output_file
     </command>
 
     <inputs>
         <param format="genbank" name="input_file" type="data" label="reference genbank file"/>
-         <param name="number" type="integer" value="50" label="flanking region"/>
-         <param name="keys" type="text" label=" list of keys separated by comma of product names"/>
+        <param name="number" type="integer" value="50" label="flanking region"/>
+        <param name="keys_1" type="text" value="transposase" label="list of keys separated by comma of product names"/>
     </inputs>
 
 
     <outputs>
-        <data format="tabular" name="output_file" from_work_dir="output_file">
+        <data format="tabular" name="output_file">
         </data>