Mercurial > repos > brigidar > select_product
changeset 1:c76d2a6bedee draft
Uploaded
author | brigidar |
---|---|
date | Thu, 08 Oct 2015 15:36:47 -0400 |
parents | 6497d42015aa |
children | 04128b8f7bc7 |
files | select_product.xml |
diffstat | 1 files changed, 49 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/select_product.xml Thu Oct 08 15:36:47 2015 -0400 @@ -0,0 +1,49 @@ +<tool id="select_product" name="select_product" version="0.1"> + <description>Finds all CDS that match the key words provided in the comma separated argument -k in the product description adds a given number of bases on each side of the transcript for the exclusion set</description> + <requirements> + + </requirements> + <command iterpreter="python"> + select_product.py + -g $input_file + -n $number + -k $keys + > output_file + </command> + + <inputs> + <param format="gbk" name="input_file" type="data" label="reference genbank file"/> + <param name="number" type="integer" value="50" label="flanking region"/> + <param name="keys" type="text" label=" list of keys separated by comma of product names"> + </inputs> + + + <outputs> + <data format="tabular" name="output_file" from_work_dir="output_file"> + </data> + + + </outputs> + + <tests> + <!-- Empty --> + </tests> + + <help> + +.. class:: infomark + +**What it does** + +wrapper for select product script +------------- + +.. class:: infomark + +**Tool Author** + +Brigida Rusconi + + + </help> +</tool> \ No newline at end of file