Mercurial > repos > brinkmanlab > emboss

annotate macros.xml @ 0:de3a45e9ccce draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
author brinkmanlab
date Tue, 25 Jan 2022 03:26:28 +0000
parents
children 40774082f93e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
1 <macros>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
2 <token name="@VERSION@">6.6.0</token>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
3 <xml name="requirements">
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
4 <requirements>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
5 <requirement type="package" version="@VERSION@">emboss</requirement>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
6 <requirement type="package" version="5.26">perl</requirement>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
7 </requirements>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
8 </xml>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
9 <xml name="stdio">
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
10 <stdio>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
11 <regex level="fatal_oom" match="insufficient memory available" source="both" />
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
12 <exit_code range="1:" />
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
13 </stdio>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
14 </xml>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
15 <xml name="bio_tools">
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
16 <xrefs>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
17 <xref type="bio.tools">emboss</xref>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
18 </xrefs>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
19 </xml>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
20 <xml name="citations">
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
21 <citations>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
22 <citation type="doi">10.1016/S0168-9525(00)02024-2</citation>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
23 <citation type="doi">10.1101/gr.5578007</citation>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
24 <yield />
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
25 </citations>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
26 </xml>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
27 <xml name="regex_sanitizer">
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
28 <sanitizer>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
29 <valid initial="string.ascii_letters,string.digits">
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
30 <add value="^"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
31 <add value="$"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
32 <add value="("/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
33 <add value=")"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
34 <add value="|"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
35 <add value="?"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
36 <add value="*"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
37 <add value="+"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
38 <add value="{"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
39 <add value="}"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
40 <add value="\"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
41 <add value="["/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
42 <add value="]"/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
43 <add value="."/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
44 <add value=","/>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
45 </valid>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
46 </sanitizer>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
47 <validator type="empty_field" />
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
48 <validator type="regex" message="Pattern must not end with backslash.">.*[^\\]$</validator>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
49 </xml>
de3a45e9ccce "planemo upload for repository https://github.com/brinkmanlab/galaxy-tools/tree/master/emboss commit eaefd81cf7afec08ffc570ac53d6718d62743a99"
brinkmanlab
parents:
diff changeset
50 </macros>