annotate mrcanavar-0.34/Changelog @ 0:86522a0b5f59 default tip

Uploaded source code for mrCaNaVaR
author calkan
date Tue, 21 Feb 2012 10:44:13 -0500
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1 December 7, 2011
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2 version 0.34:
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3 * Segmentation fault with some kernels & gcc due to an unallocated string is fixed.
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4
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5 October 13, 2011
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6 version 0.33:
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7 * Compilation errors in MacOSX are fixed.
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8 * Compilation error in x86_64 systems with gcc version > 4.33 is fixed.
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10 July 22, 2011
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11 version 0.32:
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12 * Bug in parsing chromosome names that end with whitespace is fixed.
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14 June 22, 2011
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15 version 0.31:
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16 * Bug causing infinite loop in control region selection is fixed.
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17
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18 April 16, 2011
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19 version 0.3:
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20 * Bug in GC normalization fixed
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21 * Bug in CN estimation in chrX and chrY for male mammals is fixed.
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23 March 3, 2011
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24 GC counting bug in LW when an assembly gap is 1 character is fixed. (version 0.22)
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26 March 2, 2011
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27 Bug causing segmentation fault when CW_SIZE is set to a small value is fixed. (version 0.21)
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29 February 25, 2011
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30 A bug in GC normalization is fixed. (version 0.2)
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32 January 23, 2011
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33 SW normalization implemented (copy paste from LW ;-) )
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34
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35 December 27, 2010
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36 LW normalization implemented
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38 December 21, 2010
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39 a bug in handling file names is fixed
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40
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41 December 14, 2010
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42 fixes to control selection: normalization is done AFTER controls are selected
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43 Multiplicative GC scaling option (--multgc)
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45 November 18, 2010
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46 added removing low coverage windows from controls
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47
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48 November 14, 2010
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49 version 0.1-rc
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50 added iteration until min >= mean - 3std ; and 2std for chrX
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52 November 11, 2010
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53 version 0.1-alpha