Mercurial > repos > calkan > mrcanavar
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Uploaded source code for mrCaNaVaR
author | calkan |
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date | Tue, 21 Feb 2012 10:44:13 -0500 |
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December 7, 2011 version 0.34: * Segmentation fault with some kernels & gcc due to an unallocated string is fixed. October 13, 2011 version 0.33: * Compilation errors in MacOSX are fixed. * Compilation error in x86_64 systems with gcc version > 4.33 is fixed. July 22, 2011 version 0.32: * Bug in parsing chromosome names that end with whitespace is fixed. June 22, 2011 version 0.31: * Bug causing infinite loop in control region selection is fixed. April 16, 2011 version 0.3: * Bug in GC normalization fixed * Bug in CN estimation in chrX and chrY for male mammals is fixed. March 3, 2011 GC counting bug in LW when an assembly gap is 1 character is fixed. (version 0.22) March 2, 2011 Bug causing segmentation fault when CW_SIZE is set to a small value is fixed. (version 0.21) February 25, 2011 A bug in GC normalization is fixed. (version 0.2) January 23, 2011 SW normalization implemented (copy paste from LW ;-) ) December 27, 2010 LW normalization implemented December 21, 2010 a bug in handling file names is fixed December 14, 2010 fixes to control selection: normalization is done AFTER controls are selected Multiplicative GC scaling option (--multgc) November 18, 2010 added removing low coverage windows from controls November 14, 2010 version 0.1-rc added iteration until min >= mean - 3std ; and 2std for chrX November 11, 2010 version 0.1-alpha