Mercurial > repos > calkan > mrsfast
view mrsfast-2.3.0.2/HashTable.h @ 0:ec628ba33878 default tip
Uploaded source code for mrsFAST
author | calkan |
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date | Tue, 21 Feb 2012 10:39:28 -0500 |
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/* * Copyright (c) <2008 - 2009>, University of Washington, Simon Fraser University * All rights reserved. * * Redistribution and use in source and binary forms, with or without modification, * are permitted provided that the following conditions are met: * * Redistributions of source code must retain the above copyright notice, this list * of conditions and the following disclaimer. * - Redistributions in binary form must reproduce the above copyright notice, this * list of conditions and the following disclaimer in the documentation and/or other * materials provided with the distribution. * - Neither the name of the <ORGANIZATION> nor the names of its contributors may be * used to endorse or promote products derived from this software without specific * prior written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR * PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ /* * Author : Faraz Hach * Email : fhach AT cs DOT sfu * Last Update : 2009-12-08 */ #ifndef __HASH_TABLE__ #define __HASH_TABLE__ typedef struct HashTable { long long hv; int *locs; } HashTable; typedef struct { unsigned int *locs; } IHashTable; int hashVal(char *seq); void configHashTable(); char *getRefGenome(); char *getRefGenomeName(); int getRefGenomeOffset(); int initLoadingHashTable(char *fileName); HashTable *getHashTable(); void (*generateHashTable)(char *fileName, char *indexName); int (*loadHashTable)(double *loadTime); void (*finalizeLoadingHashTable)(); unsigned int *(*getCandidates)(int hv); #endif