view data_managers/data_manager_conf.xml @ 5:84bd24ac33fd draft default tip

planemo upload for repository https://github.com/arpcard/rgi commit a87febbe1a31eb5b9918b18bc04097fe47766e71
author card
date Wed, 07 Sep 2022 13:05:05 +0000
parents ce852ee2c394
children
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<?xml version="1.0"?>
<data_managers>
    <data_manager tool_file="data_manager_rgi_build_db/data_manager/rgi_database_builder.xml" id="rgi_database_builder" version="1.2.0">
        <!-- Defines a Data Table to be modified -->
        <data_table name="rgi_databases">
            <!-- Handle the output of the Data Manager Tool -->
            <output>
                <!-- Columns that will be specified by the Data Manager Tool -->
                <column name="value" /> 
                <column name="name" />
                <!-- The value of this column will be modified based upon data in "out_file" -->
                <column name="path" output_ref="out_file" >
                    <!-- Moving a file from the extra files path of "out_file" -->
                    <move type="directory" relativize_symlinks="True">
                        <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rgi_databases/${value}/${path}</target>
                    </move>
                    <!-- Store this value in the final Data Table -->
                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rgi_databases/${value}/${path}</value_translation>
                    <value_translation type="function">abspath</value_translation>
                </column>
            </output>
        </data_table>
    </data_manager>
</data_managers>