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view data_managers/data_manager_rgi_build_db/data_manager/rgi_database_builder.xml @ 5:84bd24ac33fd draft default tip
planemo upload for repository https://github.com/arpcard/rgi commit a87febbe1a31eb5b9918b18bc04097fe47766e71
author | card |
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date | Wed, 07 Sep 2022 13:05:05 +0000 |
parents | ce852ee2c394 |
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<?xml version="1.0"?> <tool id="rgi_database_builder" name="RGI Database Builder" profile="18.09" tool_type="manage_data" version="1.2.0"> <description>Download and build the CARD database for RGI</description> <requirements> <requirement type="package" version="5.2.1">rgi</requirement> </requirements> <stdio> <exit_code description="Error" level="fatal" range="1:" /> </stdio> <command> <![CDATA[ python3 '$__tool_directory__/rgi_database_builder.py' --out "${out_file}" #if $name: --name "${name}" #end if #if $url: --url "${url}" #end if ]]> </command> <inputs> <param name="name" type="text" value="" label="Database name" help="Name for this database, or leave blank for today's date" optional="True"/> <param name="url" type="text" value="https://card.mcmaster.ca/latest/data" label="Url" help="Url for the CARD data e.g https://card.mcmaster.ca/lastest/data. Visit https://card.mcmaster.ca/download to see previous CARD releases." optional="True"/> </inputs> <outputs> <data format="data_manager_json" name="out_file" label="${tool.name} (JSON)"/> </outputs> </tool>