Mercurial > repos > cavelandiah > mirnature

annotate generate_blast_folder.sh @ 0:4394f98e705e draft default tip

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"planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
author cavelandiah
date Sun, 27 Nov 2022 22:00:05 +0000
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
1 #!/usr/bin/env bash
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
2
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
3 fasta_file=$1
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
4 # Anolis_carolinensis.fa miRNA Anolis carolinensis
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
5 base_name=$(basename $fasta_file)
4394f98e705e "planemo upload for repository https://github.com/Bierinformatik/miRNAture/tree/galaxy_add/Galaxy/miRNAture commit 47a893683a9445abddce77c28f43d098b62cf385"
cavelandiah
parents:
diff changeset
6 echo "$base_name miRNA Unknown specie"