Mercurial > repos > charles-bernard > data_manager_build_alfa_indexes
view data_manager_build_alfa_indexes/.shed.yml @ 29:0c821f76e2e5 draft default tip
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author | charles-bernard |
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date | Thu, 21 Dec 2017 13:51:22 -0500 |
parents | 4f70c9afd89d |
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categories: - Data Managers description: A tool to build ALFA indexes from automatically downloaded gtf annotation file long_description: | 1. The tool asks the admin to enter a 'species_name' and automatically download the last release of the corresponding gtf annotation file on Ensembl. 2. The tool calls ALFA to generate the alfa indexes from this gtf file. 3. Resulting indexes are stored in the child directory 'alfa_indexes' of the dir <galaxy_data_manager_data_path> defined in config/galaxy.ini 4. Finally, the tool adds the new entry to the table 'alfa_indexes.loc'. This .loc file is where the data table 'alfa_indexes' points, as defined in config/shed_tool_data_table.conf.xml 5. At the end of the process, when a user will use alfa (https://toolshed.g2.bx.psu.edu/view/charles-bernard/alfa), the built-in indexes corresponding to the 'species_name' will be available name: data_manager_build_alfa_indexes owner: charles_bernard remote_repository_url: https://github.com/charles-bernard/Galaxy_tools/tree/master/data_manager_build_alfa_indexes type: unrestricted